MEM-enriched cluster labels — mem

Generates descriptive labels for each cluster that include measured features specifically enriched on the population based on MEM scores, following the cytoMEM format. Markers are ranked by absolute MEM score and separated into positively and negatively enriched groups.

Usage

mem_labels(
  x,
  min_label_score = 1,
  max_label_markers = 5,
  show_label_scores = TRUE
)

Arguments

x: The return value of altmem() or cytoMEM::MEM().
min_label_score: Minimum absolute MEM score for a marker to be included in the label. Defaults to 1.
max_label_markers: Maximum number of markers to include per direction (positive and negative) in each label. Defaults to 5.
show_label_scores: Whether to include MEM scores alongside marker names. Defaults to TRUE.

Value

A named character vector.