Assignment of cell type labels to single-cell RNA sequencing (scRNA-seq) clusters is often a time-consuming process that involves manual inspection of the cluster marker genes complemented with a detailed literature search. This can be especially challenging when unexpected or poorly described populations are present. The clustermole R package provides methods to query cell identity markers sourced from a variety of databases.

To learn more about clustermole, check an overview of the features and an example workflow starting with a Seurat object.

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Image credit: “A Child’s Primer Of Natural History” by Oliver Herford