Function to extract data from Seurat object. — as_data_frame_seurat • scooter

Function to extract data from Seurat object.

Usage

as_data_frame_seurat(
  seurat_obj,
  assay = NULL,
  slot = NULL,
  features = NULL,
  reduction = NULL,
  metadata = TRUE
)

Arguments

seurat_obj: A Seurat object.
assay: Assay such as RNA.
slot: Slot such as counts. Default is scale.data.
features: Features from assay.
reduction: Character vector of reduction types.
metadata: Boolean. To grab metadata or not

Value

A metadata file merged on cell identifiers.