Per-cluster cell counts and a joined metadata+embeddings table.

Writes metadata-<label>.csv.gz (cell metadata joined with the tSNE/UMAP embeddings, skipped if neither reduction is present) and summary-<label>.csv (cell counts and percentages per cluster, split further by sample into summary-<label>-per-sample.csv when that differs).

Usage

calculate_cluster_stats(x, label)

Arguments

x

Seurat object with an identity set, such as via set_identity().

label

Suffix for the output filenames.

Value

x, invisibly. Called for its file output.