Run dimensionality reduction, pca, tse, and umap

Run dimensionality reduction, pca, tse, and umap

Usage

calculate_clusters(
  pcs,
  num_dim,
  log_file,
  num_neighbors = 30,
  res = NULL,
  algorithm = 3
)

Arguments

pcs

Data.

num_dim

Number of PCs to use for tsne and umap.

log_file

log file.

num_neighbors

Number of neighbors to use for umap.

res

Resolution

algorithm

See Seurat::FindClusters()

Value

.