Create a new Seurat object from a matrix. — create_seurat_obj • scooter

Create a new Seurat object from a matrix.

Usage

create_seurat_obj(
  counts_matrix,
  assay = "RNA",
  min_cells = 1,
  min_genes = 1,
  log_file = NULL,
  project = "proj"
)

Arguments

counts_matrix: A matrix of raw counts.
assay: Seurat assay to add the data to.
min_cells: Include genes/features detected in at least this many cells.
min_genes: Include cells where at least this many genes/features are detected.
log_file: Filename for the logfile.
project: Project name for Seurat object.

Value

Seurat object.