Calculate differential expression between specific groups — differential_expression_paired • scooter

Calculate differential expression between specific groups

Usage

differential_expression_paired(
  data,
  metadata,
  metadata_column,
  list_groups = NULL,
  log_fc_threshold = 0.5,
  min.pct = 0.1,
  test.use = "wilcox",
  out_path = ".",
  write = FALSE,
  log_file = NULL
)

Arguments

data: Gene expression data.
metadata: Metadata.
metadata_column: Column in metadata.
list_groups: dataframe of groups to compare in the metadata column.
log_fc_threshold: Log fc threshold.
min.pct: Minimum percentage of cells a gene must be expressed in to be tested.
test.use: Test to use.
out_path: output path.
write: Boolean to write or not.
log_file: log file.

Value

.