Calculate differentially expressed genes within each subpopulation/cluster — differential_expression_per_cluster • scooter

Calculate differentially expressed genes within each subpopulation/cluster

Usage

differential_expression_per_cluster(
  seurat_obj,
  cluster_column,
  group_column,
  test = "wilcox",
  out_path = ".",
  write = TRUE,
  log_file = NULL
)

Arguments

seurat_obj: Gene expression data.
cluster_column: Metadata column specifying the groups to split by.
group_column: Metadata column specifying the groups for differential expressin within each split.
test: Statistical method to use.
out_path: Output path.
write: Boolean to save results to disk.
log_file: log file.

Value

.