Calculate differentially expressed genes within each subpopulation/cluster

Calculate differentially expressed genes within each subpopulation/cluster

Usage

differential_expression_per_cluster(
  x,
  cluster_column,
  group_column,
  test = "wilcox",
  out_path = ".",
  write = TRUE,
  log_file = NULL
)

Arguments

x

A Seurat object.

cluster_column

Metadata column specifying the groups to split by.

group_column

Metadata column specifying the groups for differential expressin within each split.

test

Statistical method to use.

out_path

Output path.

write

Boolean to save results to disk.

log_file

log file.

Value

.