Heatmap of the top cluster markers, at several top-N cutoffs. — plot_cluster_markers_heatmap • scooter

Heatmap of the top cluster markers, at several top-N cutoffs.

Usage

plot_cluster_markers_heatmap(x, markers_tbl, num_genes, filename_base)

Arguments

x: Seurat object with an identity set.
markers_tbl: Marker table, such as from calculate_cluster_markers() - either the standard log2FC/cluster columns, or the pairwise log2FC_min/cluster columns.
num_genes: Top-N genes per cluster to include, one heatmap per value.
filename_base: Path prefix for the output files.

Value

Nothing; called for its file output.