Plot a gene list in multiple ways: UMAP, dot plot, violin, and per-cluster bar plot. — plot_cluster_markers_top • scooter

Plot a gene list in multiple ways: UMAP, dot plot, violin, and per-cluster bar plot.

Usage

plot_cluster_markers_top(
  x,
  genes,
  filename_base,
  color_scheme = get_color_scheme("clusters")
)

Arguments

x: Seurat object with an identity set.
genes: Genes to plot.
filename_base: Path prefix for the output files.
color_scheme: (optional) Named vector of cluster colors, used by the violin and bar plots. Defaults to get_color_scheme("clusters").

Value

Nothing; called for its file output.