Plot a cluster resolution on tSNE and UMAP. — plot

A single cluster says nothing, and past the color scheme's length the colors start repeating, so nothing is plotted outside 2:length(color_scheme) clusters.

Usage

plot_clusters(
  x,
  resolution,
  filename_base,
  color_scheme = get_color_scheme("clusters")
)

Arguments

x: Seurat object.
resolution: Metadata column (or bare resolution value, resolved via check_identity_column()) to set as the identity before plotting.
filename_base: Path prefix for the two plots (-tsne/-umap are appended by plot_dr_group()).
color_scheme: (optional) Named vector of cluster colors. Defaults to get_color_scheme("clusters").

Value

x with resolution set as its identity.