Plot a UMAP colored by one or more cluster/grouping variables.

Plot a UMAP colored by one or more cluster/grouping variables.

Usage

plot_dr_umap_clusters(
  x,
  cluster_var,
  color_scheme = get_color_scheme("clusters")
)

Arguments

x

Seurat object with a "umap" reduction.

cluster_var

Metadata column(s) to color by, as a single string (comma-separated for more than one).

color_scheme

(optional) Named vector of colors. Defaults to get_color_scheme("clusters").

Value

Nothing; called for its file output, one dr-umap-<cluster_var>.png per variable.