Run dimensionality reduction, pca, tse, and umap — run_dr • scooter

Run dimensionality reduction, pca, tse, and umap

Usage

run_dr(
  data,
  dr_method,
  prefix,
  assay = NULL,
  var_features = FALSE,
  features = NULL,
  graph = NULL,
  num_dim_use = NULL,
  reduction = NULL,
  num_neighbors = NULL,
  num_pcs = NULL,
  ...
)

Arguments

data: Data to use for dimensionality reduction.
dr_method: Dimensionality reduction method.
prefix: .
assay: .
var_features: .
features: .
graph: .
num_dim_use: .
reduction: .
num_neighbors: .
num_pcs: .

Value

list of dimensionality reduced/

See also

run_pca(), run_tsne(), run_umap()