Function to write Seurat counts matrix to csv. — save_seurat_counts_matrix • scooter

Function to write Seurat counts matrix to csv.

Usage

save_seurat_counts_matrix(
  seurat_obj,
  proj_name = "",
  label = "",
  out_dir = ".",
  assay = "RNA",
  slot = "data",
  log_file = NULL
)

Arguments

seurat_obj: A Seurat object.
proj_name: Name of the project that will be the prefix of the file name.
label: An optional label for the file.
out_dir: Directory in which to save csv.
assay: The assay within the Seurat object to retrieve data from.
slot: The slot within the Seurat object to retrieve data from.
log_file: A log filename.

Value

A csv file in the out_dir.