Turn a specialized single-cell data object (Seurat or SingleCellExperiment) into a more simplified "tidy" data frame.
In tidy data, each column is a variable and each observation is a row.
Usage
flatten_object(x, features = NULL, assay = "RNA", slot = "data", n_dims = 3)
Arguments
- x
An object.
- features
A vector of features/genes to include in the data frame.
- assay
The object assay name for feature abundance.
- slot
The object slot name for feature abundance.
- n_dims
An integer scalar specifying the maximum number of dimensions to return.
Value
A tibble, which is a data frame with class tbl_df.