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List the species with available human orthologs.

Usage

species(species = NULL)

Arguments

species

Species name, such as Mus musculus or mouse. If specified, will return results for the given species only.

Value

A data frame of the available species.

Examples

species()
#>    taxon_id                 scientific_name
#> 1     28377             Anolis carolinensis
#> 2      9913                      Bos taurus
#> 3      6239          Caenorhabditis elegans
#> 4      9615          Canis lupus familiaris
#> 5      7955                     Danio rerio
#> 6      7227         Drosophila melanogaster
#> 7      9796                  Equus caballus
#> 8      9685                     Felis catus
#> 9      9031                   Gallus gallus
#> 10     9544                  Macaca mulatta
#> 11    13616           Monodelphis domestica
#> 12    10090                    Mus musculus
#> 13     9258        Ornithorhynchus anatinus
#> 14     9598                 Pan troglodytes
#> 15    10116               Rattus norvegicus
#> 16     4932        Saccharomyces cerevisiae
#> 17   284812 Schizosaccharomyces pombe 972h-
#> 18     9823                      Sus scrofa
#> 19     8364              Xenopus tropicalis
#>                                                                common_name
#> 1                                              Carolina anole, green anole
#> 2  bovine, cattle, cow, dairy cow, domestic cattle, domestic cow, ox, oxen
#> 3                                                                     <NA>
#> 4                                                                dog, dogs
#> 5                        leopard danio, zebra danio, zebra fish, zebrafish
#> 6                                                                fruit fly
#> 7                                            domestic horse, equine, horse
#> 8                                                  cat, cats, domestic cat
#> 9                             bantam, chicken, chickens, Gallus domesticus
#> 10          rhesus macaque, rhesus macaques, Rhesus monkey, rhesus monkeys
#> 11                                               gray short-tailed opossum
#> 12                                                      house mouse, mouse
#> 13                       duck-billed platypus, duckbill platypus, platypus
#> 14                                                              chimpanzee
#> 15                                        brown rat, Norway rat, rat, rats
#> 16                            baker's yeast, brewer's yeast, S. cerevisiae
#> 17                                                                    <NA>
#> 18                                             pig, pigs, swine, wild boar
#> 19                               tropical clawed frog, western clawed frog
species("Mus musculus")
#>    taxon_id scientific_name        common_name
#> 12    10090    Mus musculus house mouse, mouse
species("mouse")
#>    taxon_id scientific_name        common_name
#> 12    10090    Mus musculus house mouse, mouse
species("rat")
#>    taxon_id   scientific_name                      common_name
#> 15    10116 Rattus norvegicus brown rat, Norway rat, rat, rats