List the species with available human orthologs.
Arguments
- species
Species name, such as
Mus musculusormouse. If specified, will return results for the given species only.
Examples
species()
#> taxon_id scientific_name
#> 1 28377 Anolis carolinensis
#> 2 9913 Bos taurus
#> 3 6239 Caenorhabditis elegans
#> 4 9615 Canis lupus familiaris
#> 5 7955 Danio rerio
#> 6 7227 Drosophila melanogaster
#> 7 9796 Equus caballus
#> 8 9685 Felis catus
#> 9 9031 Gallus gallus
#> 10 9544 Macaca mulatta
#> 11 13616 Monodelphis domestica
#> 12 10090 Mus musculus
#> 13 9258 Ornithorhynchus anatinus
#> 14 9598 Pan troglodytes
#> 15 10116 Rattus norvegicus
#> 16 4932 Saccharomyces cerevisiae
#> 17 284812 Schizosaccharomyces pombe 972h-
#> 18 9823 Sus scrofa
#> 19 8364 Xenopus tropicalis
#> common_name
#> 1 Carolina anole, green anole
#> 2 bovine, cattle, cow, dairy cow, domestic cattle, domestic cow, ox, oxen
#> 3 <NA>
#> 4 dog, dogs
#> 5 leopard danio, zebra danio, zebra fish, zebrafish
#> 6 fruit fly
#> 7 domestic horse, equine, horse
#> 8 cat, cats, domestic cat
#> 9 bantam, chicken, chickens, Gallus domesticus
#> 10 rhesus macaque, rhesus macaques, Rhesus monkey, rhesus monkeys
#> 11 gray short-tailed opossum
#> 12 house mouse, mouse
#> 13 duck-billed platypus, duckbill platypus, platypus
#> 14 chimpanzee
#> 15 brown rat, Norway rat, rat, rats
#> 16 baker's yeast, brewer's yeast, S. cerevisiae
#> 17 <NA>
#> 18 pig, pigs, swine, wild boar
#> 19 tropical clawed frog, western clawed frog
species("Mus musculus")
#> taxon_id scientific_name common_name
#> 12 10090 Mus musculus house mouse, mouse
species("mouse")
#> taxon_id scientific_name common_name
#> 12 10090 Mus musculus house mouse, mouse
species("rat")
#> taxon_id scientific_name common_name
#> 15 10116 Rattus norvegicus brown rat, Norway rat, rat, rats