List the collections available in the msigdbr package

Usage

msigdbr_collections(db_species = "HS")

Arguments

db_species: Species abbreviation for the human or mouse databases ("HS" or "MM").

Value

A data frame of the available collections.

Examples

msigdbr_collections()
#> # A tibble: 25 × 4
#>    gs_collection gs_subcollection  gs_collection_name               num_genesets
#>    <chr>         <chr>             <chr>                                   <int>
#>  1 C1            ""                Positional                                302
#>  2 C2            "CGP"             Chemical and Genetic Perturbati…         3538
#>  3 C2            "CP"              Canonical Pathways                         19
#>  4 C2            "CP:BIOCARTA"     BioCarta Pathways                         292
#>  5 C2            "CP:KEGG_LEGACY"  KEGG Legacy Pathways                      186
#>  6 C2            "CP:KEGG_MEDICUS" KEGG Medicus Pathways                     658
#>  7 C2            "CP:PID"          PID Pathways                              196
#>  8 C2            "CP:REACTOME"     Reactome Pathways                        1787
#>  9 C2            "CP:WIKIPATHWAYS" WikiPathways                              885
#> 10 C3            "MIR:MIRDB"       miRDB                                    2377
#> # ℹ 15 more rows