List the collections available in the msigdbr package
Source:R/msigdbr-collections.R
msigdbr_collections.RdList the collections available in the msigdbr package
Examples
msigdbr_collections()
#> db_version gs_collection gs_subcollection
#> 1 2026.1.Hs C1
#> 2 2026.1.Hs C2 CGP
#> 3 2026.1.Hs C2 CP
#> 4 2026.1.Hs C2 CP:BIOCARTA
#> 5 2026.1.Hs C2 CP:KEGG_LEGACY
#> 6 2026.1.Hs C2 CP:KEGG_MEDICUS
#> 7 2026.1.Hs C2 CP:PID
#> 8 2026.1.Hs C2 CP:REACTOME
#> 9 2026.1.Hs C2 CP:WIKIPATHWAYS
#> 10 2026.1.Hs C3 MIR:MIRDB
#> 11 2026.1.Hs C3 MIR:MIR_LEGACY
#> 12 2026.1.Hs C3 TFT:GTRD
#> 13 2026.1.Hs C3 TFT:TFT_LEGACY
#> 14 2026.1.Hs C4 3CA
#> 15 2026.1.Hs C4 CGN
#> 16 2026.1.Hs C4 CM
#> 17 2026.1.Hs C5 GO:BP
#> 18 2026.1.Hs C5 GO:CC
#> 19 2026.1.Hs C5 GO:MF
#> 20 2026.1.Hs C5 HPO
#> 21 2026.1.Hs C6
#> 22 2026.1.Hs C7 IMMUNESIGDB
#> 23 2026.1.Hs C7 VAX
#> 24 2026.1.Hs C8
#> 25 2026.1.Hs C9
#> 26 2026.1.Hs H
#> gs_collection_name num_genesets
#> 1 Positional 302
#> 2 Chemical and Genetic Perturbations 3555
#> 3 Canonical Pathways 19
#> 4 BioCarta Pathways 292
#> 5 KEGG Legacy Pathways 186
#> 6 KEGG Medicus Pathways 658
#> 7 PID Pathways 196
#> 8 Reactome Pathways 1839
#> 9 WikiPathways 925
#> 10 miRDB 2377
#> 11 MIR_Legacy 221
#> 12 GTRD 506
#> 13 TFT_Legacy 610
#> 14 Curated Cancer Cell Atlas gene sets 148
#> 15 Cancer Gene Neighborhoods 427
#> 16 Cancer Modules 431
#> 17 GO Biological Process 7538
#> 18 GO Cellular Component 1080
#> 19 GO Molecular Function 1872
#> 20 Human Phenotype Ontology 5793
#> 21 Oncogenic Signature 189
#> 22 ImmuneSigDB 4872
#> 23 HIPC Vaccine Response 347
#> 24 Cell Type Signature 866
#> 25 Computational Perturbation Signature 62
#> 26 Hallmark 50