List the collections available in the msigdbr package
Source:R/msigdbr-collections.R
msigdbr_collections.Rd
List the collections available in the msigdbr package
Examples
msigdbr_collections()
#> # A tibble: 25 × 4
#> gs_collection gs_subcollection gs_collection_name num_genesets
#> <chr> <chr> <chr> <int>
#> 1 C1 "" Positional 302
#> 2 C2 "CGP" Chemical and Genetic Perturbati… 3538
#> 3 C2 "CP" Canonical Pathways 19
#> 4 C2 "CP:BIOCARTA" BioCarta Pathways 292
#> 5 C2 "CP:KEGG_LEGACY" KEGG Legacy Pathways 186
#> 6 C2 "CP:KEGG_MEDICUS" KEGG Medicus Pathways 658
#> 7 C2 "CP:PID" PID Pathways 196
#> 8 C2 "CP:REACTOME" Reactome Pathways 1787
#> 9 C2 "CP:WIKIPATHWAYS" WikiPathways 885
#> 10 C3 "MIR:MIRDB" miRDB 2377
#> # ℹ 15 more rows