Changelog

Source: NEWS.md

msigdbr 24.1.0

CRAN release: 2025-05-13

• Updated the package to download the data, removing the non-CRAN msigdbdf data package dependency.
• Included the MSigDB v2024.1 data.
• Updated the package versioning scheme so it is tied to the MSigDB release.

msigdbr 10.0.2

CRAN release: 2025-04-14

• Updated tests.

msigdbr 10.0.1

CRAN release: 2025-03-19

• Updated documentation.

msigdbr 10.0.0

CRAN release: 2025-03-12

• Removed the MSigDB data (now a separate package msigdbdf).
• Updated the package versioning scheme so it is not tied to the MSigDB release.
• Added support for mouse versions of MSigDB (msigdbr() gains a db_species argument).
• Updated the annotation fields in the returned gene sets.
• Updated the msigdbr() arguments gs_cat and gs_subcat to gs_collection and gs_subcollection.

msigdbr 2023.1.1

• Based on MSigDB v2023.1.Hs release.
• Not available on CRAN.

msigdbr 2022.1.1

• Based on MSigDB v2022.1.Hs release.
• Not available on CRAN.

msigdbr 7.5.1

CRAN release: 2022-03-30

• Based on MSigDB v7.5.1 release.

msigdbr 7.4.1

CRAN release: 2021-05-05

• Based on MSigDB v7.4 release.
• Added Ensembl gene IDs to the returned gene sets.

msigdbr 7.2.1

CRAN release: 2020-10-02

• Based on MSigDB v7.2 release.
• Added more annotation fields to the returned gene sets.
• Added msigdbr_species() as an alternative to msigdbr_show_species().
• Added msigdbr_collections().

msigdbr 7.1.1

CRAN release: 2020-05-14

• Based on MSigDB v7.1 release.
• Increased ortholog prediction stringency.

msigdbr 7.0.1

CRAN release: 2019-09-04

• Based on MSigDB v7.0 release.
• Fixed output when selecting multiple collections.

msigdbr 6.2.1

CRAN release: 2018-10-09

• Based on MSigDB v6.2 release.

msigdbr 6.1.1

CRAN release: 2018-04-12

• Based on MSigDB v6.1 release.
• Initial CRAN submission.