Function reference • phenomenalist

All functions

clean_col_names(): Clean up data frame column names

cluster(): Perform clustering

create_object(): Create a SpatialExperiment object

detect_exprs_cols(): Detect marker/antibody column names

plot_distribution(): Plot expression distribution

plot_dr(): Plot dimensionality reduction

plot_heatmap(): Generate a heatmap

plot_scatter(): Generate a generic scatter plot

plot_spatial(): Plot cells on their spatial coordinates

run_umap(): Run UMAP dimensionality reduction

transform(): Transform/normalize expression data